STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC84530.1Putative auto-transporter adhesin, head GIN domain. (220 aa)    
Predicted Functional Partners:
SMC84522.1
D-alanyl-D-alanine carboxypeptidase.
       0.773
SMC41864.1
Hypothetical protein.
  
     0.719
SMC84574.1
Hypothetical protein.
 
     0.595
SMC84540.1
Gliding motility-associated C-terminal domain-containing protein.
 
     0.589
SMC45906.1
Pentapeptide repeat-containing protein.
  
 
   0.569
SMC32744.1
CarboxypepD_reg-like domain-containing protein.
  
     0.559
SMC79753.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.528
SMC71137.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.523
SMC65604.1
N-Dimethylarginine dimethylaminohydrolase.
  
     0.518
SMC63121.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Moheibacter sediminis
NCBI taxonomy Id: 1434700
Other names: CGMCC 1.12708, Empedobacter sp. M0116, JCM 19634, M. sediminis, Moheibacter sediminis Zhang et al. 2014, strain M0116
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