STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC90038.1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (540 aa)    
Predicted Functional Partners:
SMC90045.1
Unsaturated rhamnogalacturonyl hydrolase.
     0.980
SMC90033.1
Lysophospholipase L1.
 
  
 0.949
SMC90051.1
Protein of unknown function.
 
     0.934
SMC90087.1
Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family.
  
  0.876
SMC89303.1
Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family.
  
  0.832
SMC77062.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  0.813
SMC89266.1
Lysophospholipase L1.
 
  
 0.797
SMC89277.1
Pectinesterase.
 
     0.784
SMC89294.1
Pectinesterase.
 
     0.784
SMC89248.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.645
Your Current Organism:
Moheibacter sediminis
NCBI taxonomy Id: 1434700
Other names: CGMCC 1.12708, Empedobacter sp. M0116, JCM 19634, M. sediminis, Moheibacter sediminis Zhang et al. 2014, strain M0116
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