STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK58297.1ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain. (555 aa)    
Predicted Functional Partners:
SHK58326.1
Multidrug resistance efflux pump.
 0.986
SHK58359.1
Outer membrane protein TolC.
 
 
  0.961
SHK58274.1
Transcriptional regulator, TetR family.
 
     0.956
SHL29171.1
HlyD family secretion protein.
 
 0.812
SHK49318.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
  0.790
SHK62203.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
  0.790
SHL12899.1
ATP-binding cassette, subfamily B.
 
 
 
0.781
SHK61085.1
ATP-binding cassette, subfamily B.
  
 
 
0.735
SHL12948.1
ATP-binding cassette, subfamily B.
  
 
 
0.733
SHL33694.1
ATP-binding cassette, subfamily B, MsbA.
  
 
 
0.733
Your Current Organism:
Chishuiella changwenlii
NCBI taxonomy Id: 1434701
Other names: C. changwenlii, CGMCC 1.12707, Chishuiella changwenlii Zhang et al. 2014, DSM 27989, JCM 19633, Wautersiella sp. BY4, strain BY4
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