STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK59129.1TonB-linked outer membrane protein, SusC/RagA family. (1064 aa)    
Predicted Functional Partners:
SHK59106.1
Starch-binding associating with outer membrane.
     0.943
SHK59077.1
Metalloenzyme superfamily protein.
 
     0.830
SHK85584.1
Starch-binding associating with outer membrane.
     0.762
SHL63877.1
Starch-binding associating with outer membrane.
 
     0.759
SHL32997.1
SusD family protein.
  
 
   0.627
SHL12752.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.602
SHL61716.1
Starch-binding associating with outer membrane.
  
 
   0.560
SHK59160.1
methionyl-tRNA synthetase C-terminal region/beta chain.
       0.529
SHL25679.1
SusD family protein.
  
 
   0.527
SHK99956.1
SusD family protein.
  
 
   0.523
Your Current Organism:
Chishuiella changwenlii
NCBI taxonomy Id: 1434701
Other names: C. changwenlii, CGMCC 1.12707, Chishuiella changwenlii Zhang et al. 2014, DSM 27989, JCM 19633, Wautersiella sp. BY4, strain BY4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.