STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK57964.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
SHL55806.1
YHS domain-containing protein.
   
  0.867
SHL57351.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit.
  
 
 0.842
SHK47147.1
Ferredoxin.
 
 
 0.817
SHK97621.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.792
SHL65594.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 
 0.792
SHL71859.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.777
SHK57869.1
Hypothetical protein.
 
     0.764
SHK79913.1
Type IX secretion system membrane protein, PorP/SprF family.
  
  
  0.755
SHL43638.1
Tetratricopeptide repeat-containing protein.
  
    0.743
SHK72777.1
Probable protein-translocating porin PorT.
  
     0.727
Your Current Organism:
Chishuiella changwenlii
NCBI taxonomy Id: 1434701
Other names: C. changwenlii, CGMCC 1.12707, Chishuiella changwenlii Zhang et al. 2014, DSM 27989, JCM 19633, Wautersiella sp. BY4, strain BY4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.