STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK72948.1methylmalonyl-CoA epimerase. (132 aa)    
Predicted Functional Partners:
SHL22930.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
  
 0.980
SHL69775.1
Heterodimeric methylmalonyl-CoA mutase small subunit.
 
  
 0.967
SHK63496.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
 
 0.956
SHL24074.1
methylmalonyl-CoA mutase metallochaperone MeaB.
     0.903
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.869
SHL07326.1
Homogentisate 1,2-dioxygenase.
  
 0.807
SHL26407.1
Glyoxalase family protein.
    
 0.691
SHK84315.1
Thiopurine S-methyltransferase (TPMT).
 
      0.672
SHK72916.1
Tetratricopeptide repeat-containing protein.
   
   0.585
SHL68552.1
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.511
Your Current Organism:
Chishuiella changwenlii
NCBI taxonomy Id: 1434701
Other names: C. changwenlii, CGMCC 1.12707, Chishuiella changwenlii Zhang et al. 2014, DSM 27989, JCM 19633, Wautersiella sp. BY4, strain BY4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.