STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK86291.1Isopentenyl-diphosphate delta-isomerase. (173 aa)    
Predicted Functional Partners:
SHL28611.1
Diphosphomevalonate decarboxylase.
 
 
 0.989
SHL06156.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 
 0.966
SHK86265.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
       0.819
SHK86233.1
Peroxiredoxin Q/BCP.
       0.801
SHL70875.1
Phytoene/squalene synthetase.
 
 
 0.779
SHL27382.1
hydroxymethylglutaryl-CoA synthase.
  
  
 0.763
SHK86315.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
       0.689
SHK62716.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.578
SHL23337.1
4-hydroxybenzoate polyprenyltransferase.
  
 
 0.578
SHL34248.1
3-hydroxy-3-methylglutaryl-coenzyme A reductase.
  
  
 0.547
Your Current Organism:
Chishuiella changwenlii
NCBI taxonomy Id: 1434701
Other names: C. changwenlii, CGMCC 1.12707, Chishuiella changwenlii Zhang et al. 2014, DSM 27989, JCM 19633, Wautersiella sp. BY4, strain BY4
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