STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL25679.1SusD family protein. (504 aa)    
Predicted Functional Partners:
SHL25645.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.957
SHL25586.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.799
SHL64578.1
Iron complex outermembrane recepter protein.
  
 
   0.741
SHL32967.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.701
SHL73553.1
Tfp pilus assembly protein PilF.
  
 
   0.660
SHL53325.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.657
SHL17100.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.655
SHL28701.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.648
SHL53402.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.633
SHL34364.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.603
Your Current Organism:
Chishuiella changwenlii
NCBI taxonomy Id: 1434701
Other names: C. changwenlii, CGMCC 1.12707, Chishuiella changwenlii Zhang et al. 2014, DSM 27989, JCM 19633, Wautersiella sp. BY4, strain BY4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.