parPi_0003659 protein (Paroedura picta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

parPi_0003659

Uncharacterized protein. (201 aa)

Predicted Functional Partners:

parPi_0023380

0.655

parPi_0025737

0.624

parPi_0012840

0.616

parPi_0024087

0.598

parPi_0028661

0.598

PES1

0.588

parPi_0030965

0.588

parPi_0013048

0.572

parPi_0012521

0.565

parPi_0005543

0.564

Your Current Organism:

Paroedura picta

NCBI taxonomy Id: 143630
Other names: P. picta, ZMB 4798

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PES1	parPi_0003659	A0A402EE65	A0A402EJI8	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.588
PES1	parPi_0012521	A0A402EE65	A0A402F400	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal_L2_C domain-containing protein.	0.946
PES1	parPi_0023380	A0A402EE65	A0A402FUH8	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.960
PES1	parPi_0024087	A0A402EE65	A0A402FVT0	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ipi1_N domain-containing protein.	0.775
PES1	parPi_0028661	A0A402EE65	A0A402G0E6	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.775
parPi_0003659	PES1	A0A402EJI8	A0A402EE65	Uncharacterized protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.588
parPi_0003659	parPi_0005543	A0A402EJI8	A0A402EP01	Uncharacterized protein.	Uncharacterized protein.	0.564
parPi_0003659	parPi_0012521	A0A402EJI8	A0A402F400	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.565
parPi_0003659	parPi_0012840	A0A402EJI8	A0A402F4V4	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S54 family.	0.616
parPi_0003659	parPi_0013048	A0A402EJI8	A0A402F5F2	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.572
parPi_0003659	parPi_0023380	A0A402EJI8	A0A402FUH8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.655
parPi_0003659	parPi_0024087	A0A402EJI8	A0A402FVT0	Uncharacterized protein.	Ipi1_N domain-containing protein.	0.598
parPi_0003659	parPi_0025737	A0A402EJI8	A0A402E7P5	Uncharacterized protein.	Ig-like domain-containing protein.	0.624
parPi_0003659	parPi_0028661	A0A402EJI8	A0A402G0E6	Uncharacterized protein.	Uncharacterized protein.	0.598
parPi_0003659	parPi_0030965	A0A402EJI8	A0A402G6M3	Uncharacterized protein.	Uncharacterized protein.	0.588
parPi_0005543	parPi_0003659	A0A402EP01	A0A402EJI8	Uncharacterized protein.	Uncharacterized protein.	0.564
parPi_0012521	PES1	A0A402F400	A0A402EE65	Ribosomal_L2_C domain-containing protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.946
parPi_0012521	parPi_0003659	A0A402F400	A0A402EJI8	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.565
parPi_0012521	parPi_0023380	A0A402F400	A0A402FUH8	Ribosomal_L2_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.847
parPi_0012521	parPi_0024087	A0A402F400	A0A402FVT0	Ribosomal_L2_C domain-containing protein.	Ipi1_N domain-containing protein.	0.826