parPi_0011436 protein (Paroedura picta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

parPi_0011436

Uncharacterized protein. (481 aa)

Predicted Functional Partners:

parPi_0015761

0.996

parPi_0004410

0.994

parPi_0016053

0.992

parPi_0020025

0.992

parPi_0013818

0.991

parPi_0013817

0.991

parPi_0023987

0.990

parPi_0007931

0.989

parPi_0011434

0.987

parPi_0014305

0.985

Your Current Organism:

Paroedura picta

NCBI taxonomy Id: 143630
Other names: P. picta, ZMB 4798

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
parPi_0004410	parPi_0007931	A0A402ELA9	A0A402EUD5	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.998
parPi_0004410	parPi_0011436	A0A402ELA9	A0A402F284	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.994
parPi_0004410	parPi_0013817	A0A402ELA9	A0A402F7L9	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.995
parPi_0004410	parPi_0013818	A0A402ELA9	A0A402F705	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.995
parPi_0004410	parPi_0014305	A0A402ELA9	A0A402F8B9	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.997
parPi_0004410	parPi_0015761	A0A402ELA9	A0A402FBI4	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.991
parPi_0004410	parPi_0016053	A0A402ELA9	A0A402FC48	TFIIB-type domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.998
parPi_0004410	parPi_0020025	A0A402ELA9	A0A402FLM7	TFIIB-type domain-containing protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.998
parPi_0004410	parPi_0023987	A0A402ELA9	A0A402FVG0	TFIIB-type domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.998
parPi_0007931	parPi_0004410	A0A402EUD5	A0A402ELA9	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.998
parPi_0007931	parPi_0011436	A0A402EUD5	A0A402F284	Uncharacterized protein.	Uncharacterized protein.	0.989
parPi_0007931	parPi_0013817	A0A402EUD5	A0A402F7L9	Uncharacterized protein.	Uncharacterized protein.	0.991
parPi_0007931	parPi_0013818	A0A402EUD5	A0A402F705	Uncharacterized protein.	Uncharacterized protein.	0.991
parPi_0007931	parPi_0014305	A0A402EUD5	A0A402F8B9	Uncharacterized protein.	Uncharacterized protein.	0.999
parPi_0007931	parPi_0015761	A0A402EUD5	A0A402FBI4	Uncharacterized protein.	Uncharacterized protein.	0.985
parPi_0007931	parPi_0016053	A0A402EUD5	A0A402FC48	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.999
parPi_0007931	parPi_0020025	A0A402EUD5	A0A402FLM7	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.999
parPi_0007931	parPi_0023987	A0A402EUD5	A0A402FVG0	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
parPi_0011434	parPi_0011436	A0A402F1N6	A0A402F284	Uncharacterized protein; Belongs to the Stoned B family.	Uncharacterized protein.	0.987
parPi_0011436	parPi_0004410	A0A402F284	A0A402ELA9	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.994