parPi_0011779 protein (Paroedura picta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

parPi_0011779

Uncharacterized protein. (177 aa)

Predicted Functional Partners:

parPi_0011780

0.812

parPi_0000105

0.563

parPi_0001417

0.563

parPi_0006970

0.563

parPi_0021964

0.563

parPi_0010858

0.545

parPi_0001415

0.524

parPi_0007005

0.524

parPi_0023102

0.499

parPi_0000006

0.447

Your Current Organism:

Paroedura picta

NCBI taxonomy Id: 143630
Other names: P. picta, ZMB 4798

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
parPi_0000006	parPi_0011779	A0A402E5L3	A0A402F311	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.447
parPi_0000006	parPi_0011780	A0A402E5L3	A0A402F2M4	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.447
parPi_0000006	parPi_0023102	A0A402E5L3	A0A402FTG0	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.569
parPi_0000105	parPi_0011779	A0A402E5T5	A0A402F311	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.563
parPi_0000105	parPi_0011780	A0A402E5T5	A0A402F2M4	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.563
parPi_0001415	parPi_0011779	A0A402EB33	A0A402F311	Uncharacterized protein.	Uncharacterized protein.	0.524
parPi_0001415	parPi_0011780	A0A402EB33	A0A402F2M4	Uncharacterized protein.	Uncharacterized protein.	0.524
parPi_0001417	parPi_0011779	A0A402EB41	A0A402F311	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.563
parPi_0001417	parPi_0011780	A0A402EB41	A0A402F2M4	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.563
parPi_0006970	parPi_0011779	A0A402ES91	A0A402F311	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.563
parPi_0006970	parPi_0011780	A0A402ES91	A0A402F2M4	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.563
parPi_0007005	parPi_0011779	A0A402ESB8	A0A402F311	Uncharacterized protein.	Uncharacterized protein.	0.524
parPi_0007005	parPi_0011780	A0A402ESB8	A0A402F2M4	Uncharacterized protein.	Uncharacterized protein.	0.524
parPi_0010858	parPi_0011779	A0A402F0M7	A0A402F311	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.545
parPi_0010858	parPi_0011780	A0A402F0M7	A0A402F2M4	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.545
parPi_0011779	parPi_0000006	A0A402F311	A0A402E5L3	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.447
parPi_0011779	parPi_0000105	A0A402F311	A0A402E5T5	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.563
parPi_0011779	parPi_0001415	A0A402F311	A0A402EB33	Uncharacterized protein.	Uncharacterized protein.	0.524
parPi_0011779	parPi_0001417	A0A402F311	A0A402EB41	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.563
parPi_0011779	parPi_0006970	A0A402F311	A0A402ES91	Uncharacterized protein.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.563