STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF85253.1Transcriptional regulator, AraC family. (308 aa)    
Predicted Functional Partners:
SFF85191.1
Hypothetical protein.
 
     0.757
SFH12067.1
Methyl-accepting chemotaxis protein.
    
 0.743
SFF85218.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.678
SFH08366.1
Glutamate synthase (NADH) large subunit.
    
  0.605
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.599
SFG51304.1
Allosteric NADP-dependent malic enzyme.
     
 0.510
SFH16664.1
Hypothetical protein.
 
     0.492
SFF88206.1
Transcriptional regulator, AraC family.
  
     0.479
SFH16711.1
AraC-type DNA-binding protein.
  
     0.454
SFF99016.1
Transcriptional regulator, AraC family.
  
   0.420
Your Current Organism:
Pontibacter chinhatensis
NCBI taxonomy Id: 1436961
Other names: CCM 8436, MCC 2070, P. chinhatensis, Pontibacter chinhatensis Singh et al. 2015, Pontibacter sp. LP51, strain LP51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.