STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN69732.1Protein of unknown function. (69 aa)    
Predicted Functional Partners:
SHN69728.1
Uncharacterized membrane protein YccC.
 
   
 0.950
SHN69738.1
RND family efflux transporter, MFP subunit.
 
     0.875
SHN69742.1
Uncharacterized conserved protein YraI.
       0.531
SHN78341.1
Outer membrane protein (porin).
  
     0.484
SHN81155.1
2,5-dihydroxypyridine 5,6-dioxygenase.
  
     0.482
SHN65779.1
Outer membrane protein (porin).
  
     0.464
SHN65666.1
Outer membrane protein (porin).
  
     0.435
SHN73807.1
ROK family protein.
  
     0.424
SHN81654.1
Outer membrane protein (porin).
  
     0.423
SHN85284.1
Uncharacterized membrane protein YkgB.
  
     0.409
Your Current Organism:
Bradyrhizobium erythrophlei
NCBI taxonomy Id: 1437360
Other names: B. erythrophlei, Bradyrhizobium erythrophlei Yao et al. 2015, Bradyrhizobium sp. CCBAU 53266, Bradyrhizobium sp. CCBAU 53267, Bradyrhizobium sp. CCBAU 53325, CCBAU 53325, HAMBI 3614, LMG 28425, LMG:28425
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