STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSEC_0099Putative type III secretion protein SctQ. (481 aa)    
Predicted Functional Partners:
sctN
Type III secretion cytoplasmic ATPase SctN.
 
 
 0.997
ispf1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
   
   0.994
CSEC_0332
Signal transduction histidine kinase.
  
 0.993
sctL
Type III secretion protein SctL.
 
 
 0.991
CSEC_1500
Signal transduction histidine kinase.
  
 0.984
sctS
Type III secretion inner membrane protein SctS.
 
  
 0.982
sctU
Type III secretion inner membrane protein SctU.
 
  
 0.963
cheA
Chemotaxis protein CheA.
 
 
 0.945
sctT
Putative type III secretion inner membrane protein SctT.
 
  
 0.944
CSEC_1002
Signal transduction histidine kinase.
 
 0.943
Your Current Organism:
Criblamydia sequanensis
NCBI taxonomy Id: 1437425
Other names: C. sequanensis CRIB-18, Criblamydia sequanensis CRIB-18
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