STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSEC_0144Sigma-54 dependent response regulator. (461 aa)    
Predicted Functional Partners:
CSEC_0332
Signal transduction histidine kinase.
 0.993
CSEC_0145
Two-component system, sensor histidine kinase.
 0.991
CSEC_1500
Signal transduction histidine kinase.
 0.991
CSEC_0293
Signal transduction histidine kinase.
 0.989
cheA
Chemotaxis protein CheA.
  
0.967
CSEC_1002
Signal transduction histidine kinase.
 
0.958
ribBA
Riboflavin biosynthesis protein ribBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.932
rpoN
RNA polymerase sigma-54 factor.
 
  
 0.912
mcpA
Methyl-accepting chemotaxis protein.
  
 
 0.901
CSEC_1388
Chemotaxis signal transduction protein.
  
 
 0.901
Your Current Organism:
Criblamydia sequanensis
NCBI taxonomy Id: 1437425
Other names: C. sequanensis CRIB-18, Criblamydia sequanensis CRIB-18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.