STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSEC_0400Histone deacetylase superfamily protein. (360 aa)    
Predicted Functional Partners:
CSEC_2105
Putative amine oxidase.
    
 0.891
htpG
Putative chaperone protein htpG.
    
 0.779
acna1
Aconitate hydratase.
       0.773
CSEC_0897
WD repeat-containing protein.
    
 0.656
CSEC_1825
WD repeat-containing protein.
    
 0.656
CSEC_2009
F-box and WD repeat-containing protein.
    
 0.656
CSEC_1465
SET domain-containing protein.
 
 0.643
CSEC_1766
SET domain-containing protein.
 
 0.630
CSEC_1991
NAD-dependent 2-hydroxyacid dehydrogenase.
    
 0.588
CSEC_0401
Methyltransferase.
       0.580
Your Current Organism:
Criblamydia sequanensis
NCBI taxonomy Id: 1437425
Other names: C. sequanensis CRIB-18, Criblamydia sequanensis CRIB-18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.