STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimk3Ribosomal protein S6 modification protein; Belongs to the RimK family. (466 aa)    
Predicted Functional Partners:
carB
Carbamoyl-phosphate synthase large subunit.
    
  0.602
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
    
  0.602
CSEC_0469
Glycosyl hydrolase.
       0.491
CSEC_0285
FAD dependent oxidoreductase.
    
 0.484
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.421
CSEC_0332
Signal transduction histidine kinase.
     
 0.418
CSEC_1500
Signal transduction histidine kinase.
     
 0.416
mcsS
Mechanosensitive ion channel protein.
 
     0.404
CSEC_0468
Putative membrane protein.
       0.403
CSEC_2193
Mechanosensitive ion channel protein.
 
    0.402
Your Current Organism:
Criblamydia sequanensis
NCBI taxonomy Id: 1437425
Other names: C. sequanensis CRIB-18, Criblamydia sequanensis CRIB-18
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