STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSEC_0577Leucine-rich repeat (LRR) protein. (405 aa)    
Predicted Functional Partners:
CSEC_1376
Conserved hypothetical protein.
  
     0.669
lplA
Putative lipoate-protein ligase A.
  
     0.643
CSEC_0055
Conserved hypothetical protein.
  
     0.641
CSEC_2325
Putative membrane protein.
  
     0.635
def5
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
     0.519
CSEC_0576
Putative long-chain-fatty-acid--[acyl-carrier-protein] ligase.
       0.499
CSEC_0729
Phosphoprotein phosphatase.
  
     0.475
CSEC_0628
Cysteine protease.
  
     0.448
CSEC_1037
Putative membrane protein.
  
     0.446
CSEC_0823
Hypothetical protein.
  
     0.444
Your Current Organism:
Criblamydia sequanensis
NCBI taxonomy Id: 1437425
Other names: C. sequanensis CRIB-18, Criblamydia sequanensis CRIB-18
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