STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSEC_0729Phosphoprotein phosphatase. (733 aa)    
Predicted Functional Partners:
CSEC_0472
Hypothetical protein.
  
  0.846
CSEC_2325
Putative membrane protein.
  
     0.748
CSEC_2265
Putative membrane protein.
  
    0.728
CSEC_1747
Leucine-rich repeat (LRR) protein.
  
 
   0.683
CSEC_1730
Serine/threonine protein phosphatase.
  
     0.654
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.634
CSEC_1465
SET domain-containing protein.
  
 
   0.632
CSEC_1612
Serine/threonine protein kinase.
  
  0.604
CSEC_0508
Ankyrin repeat-containing protein.
  
   0.597
CSEC_2353
Hypothetical protein.
 
    0.595
Your Current Organism:
Criblamydia sequanensis
NCBI taxonomy Id: 1437425
Other names: C. sequanensis CRIB-18, Criblamydia sequanensis CRIB-18
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