Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CSEC_0582 | dnaN | CSEC_0582 | CSEC_2175 | Putative membrane protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.946 |
| CSEC_0582 | mutY | CSEC_0582 | CSEC_1689 | Putative membrane protein. | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.932 |
| CSEC_0582 | nth | CSEC_0582 | CSEC_1522 | Putative membrane protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.967 |
| CSEC_0582 | polA | CSEC_0582 | CSEC_1979 | Putative membrane protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.974 |
| CSEC_0754 | mutY | CSEC_0754 | CSEC_1689 | Putative membrane protein. | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.428 |
| CSEC_1312 | mutY | CSEC_1312 | CSEC_1689 | Conserved putative membrane protein. | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.638 |
| CSEC_1688 | mutY | CSEC_1688 | CSEC_1689 | Hypothetical protein. | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.527 |
| CSEC_1690 | mutY | CSEC_1690 | CSEC_1689 | Putative membrane protein. | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.535 |
| dnaN | CSEC_0582 | CSEC_2175 | CSEC_0582 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Putative membrane protein. | 0.946 |
| dnaN | mutY | CSEC_2175 | CSEC_1689 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.628 |
| dnaN | polA | CSEC_2175 | CSEC_1979 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
| hemN | mutY | CSEC_1264 | CSEC_1689 | Putative coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | 0.565 |
| mutY | CSEC_0582 | CSEC_1689 | CSEC_0582 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Putative membrane protein. | 0.932 |
| mutY | CSEC_0754 | CSEC_1689 | CSEC_0754 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Putative membrane protein. | 0.428 |
| mutY | CSEC_1312 | CSEC_1689 | CSEC_1312 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Conserved putative membrane protein. | 0.638 |
| mutY | CSEC_1688 | CSEC_1689 | CSEC_1688 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Hypothetical protein. | 0.527 |
| mutY | CSEC_1690 | CSEC_1689 | CSEC_1690 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Putative membrane protein. | 0.535 |
| mutY | dnaN | CSEC_1689 | CSEC_2175 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.628 |
| mutY | hemN | CSEC_1689 | CSEC_1264 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Putative coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.565 |
| mutY | nth | CSEC_1689 | CSEC_1522 | A/G-specific adenine glycosylase MutY; Adenine glycosylase active on G-A mispairs. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.672 |
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