STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V490_02449RNB domain-containing protein. (1398 aa)    
Predicted Functional Partners:
V490_05592
EXOSC1 domain-containing protein.
   
 0.974
V490_09038
Uncharacterized protein.
   
 0.973
V490_08922
RNase_PH domain-containing protein.
   
 0.972
V490_01044
Uncharacterized protein.
   
 0.971
V490_03218
RNase_PH domain-containing protein.
   
 0.970
V490_03011
ECR1_N domain-containing protein.
   
 0.970
V490_02894
RNase_PH domain-containing protein.
   
 0.968
V490_02690
Tr-type G domain-containing protein.
   
 0.967
V490_00152
Uncharacterized protein.
   
 0.967
V490_03773
RNase_PH domain-containing protein.
   
 0.956
Your Current Organism:
Pseudogymnoascus sp. VKMF3557
NCBI taxonomy Id: 1437433
Other names: P. sp. VKM F-3557, Pseudogymnoascus sp. VKM F-3557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.