STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V490_08351Beta_elim_lyase domain-containing protein. (784 aa)    
Predicted Functional Partners:
V490_03805
Uncharacterized protein.
  
 0.851
V490_04491
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
    
 0.837
V490_04272
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.810
V490_04088
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
   
 0.810
V490_03095
Threonine dehydratase.
   
 
 0.787
V490_05676
Aminotran_1_2 domain-containing protein.
     
 0.783
V490_01989
PALP domain-containing protein.
   
 
 0.772
V490_02687
DAO domain-containing protein.
     
 0.758
V490_05730
PALP domain-containing protein.
   
 
 0.757
V490_05751
Uncharacterized protein.
   
 
 0.757
Your Current Organism:
Pseudogymnoascus sp. VKMF3557
NCBI taxonomy Id: 1437433
Other names: P. sp. VKM F-3557, Pseudogymnoascus sp. VKM F-3557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.