STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISA_0009ATPase. (388 aa)    
Predicted Functional Partners:
BISA_0008
Hypothetical protein.
 
  
 0.916
BISA_0006
Transglutaminase.
 
     0.823
BISA_0005
Phosphoprotein phosphatase.
       0.790
BISA_0339
Transglutaminase.
 
     0.773
BISA_0007
Transglutaminase-like superfamily protein.
       0.764
BISA_0004
Hypothetical protein.
       0.739
BISA_0003
FHA domain-containing protein.
       0.701
BISA_0010
Fibronectin type III domain-containing protein.
       0.626
BISA_1174
Hypothetical protein.
 
  
 0.608
BISA_0011
Protein kinase.
     
 0.560
Your Current Organism:
Bifidobacterium saguini
NCBI taxonomy Id: 1437607
Other names: B. saguini DSM 23967, Bifidobacterium saguini DSM 23967, Bifidobacterium sp. AFB23-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.