STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mraZUnannotated protein; Belongs to the MraZ family. (173 aa)    
Predicted Functional Partners:
rsmH
Unannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
 0.996
BBIA_1253
Unannotated protein.
 
  
 0.892
BBIA_1254
Unannotated protein.
  
  
 0.844
BBIA_1252
Unannotated protein.
  
  
 0.777
murF
Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 
 0.713
murG
Unannotated protein; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
   
 0.599
GCA_000771645_01153
Unannotated protein.
     
 0.551
BBIA_1696
Unannotated protein.
  
  
 0.534
pheT
Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
   0.532
BBIA_1257
Unannotated protein.
       0.505
Your Current Organism:
Bifidobacterium biavatii
NCBI taxonomy Id: 1437608
Other names: B. biavatii DSM 23969, Bifidobacterium biavatii AFB23-4, Bifidobacterium biavatii DSM 23969, Bifidobacterium sp. AFB23-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.