STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM23297.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
CDM23299.1
Type III secretion bridge between inner and outermembrane lipoprotein.
  
  
 0.986
CDM23300.1
Hypothetical protein.
  
    0.984
CDM23296.1
Putative regulatory protein.
  
 
 0.971
CDM23294.1
Putative outer protein.
  
  
 0.953
CDM23301.1
Type III secretion cytoplasmic protein.
  
    0.908
CDM23298.1
Putative type III secretion protein.
  
    0.906
CDM23303.1
Type III secretion spans bacterial envelope protein YscO.
  
    0.906
CDM23307.1
Type III secretion inner membrane protein YscS.
  
  
 0.884
CDM23305.1
Type III secretion inner membrane protein YscQ.
  
  
 0.866
CDM23295.1
Type III secretion host injection protein YopB.
  
  
 0.863
Your Current Organism:
Castellaniella defragrans
NCBI taxonomy Id: 1437824
Other names: C. defragrans 65Phen, Castellaniella defragrans 65Phen
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.