STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EXF46723.1M24/M37 family peptidase. (281 aa)    
Predicted Functional Partners:
EXF43795.1
M24/M37 family peptidase.
 
   
 0.785
EXF43985.1
Peptidase.
  
   
 0.777
amiB
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.632
EXF47300.1
Response regulator; Overlaps another CDS with the same product name.
    
   0.532
mltD_1
Membrane-bound lytic murein transglycosylase D.
  
 
 0.484
mltD_2
Membrane-bound lytic murein transglycosylase D.
  
 
 0.484
ponA
Penicillin-binding protein 1A.
 
   
 0.469
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
   
 0.455
EXF46722.1
TetR family transcriptional regulator.
       0.445
secF
Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.429
Your Current Organism:
Pseudomonas sp. BAY1663
NCBI taxonomy Id: 1439940
Other names: P. sp. BAY1663
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.