STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ribDRiboflavin biosynthesis protein RibD. (84 aa)    
Predicted Functional Partners:
ribB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 0.999
ribE-1
Riboflavin synthase subunit alpha.
  
 
 0.990
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family.
  
 0.988
ribA_1
GTP cyclohydrolase II; Overlaps another CDS with the same product name.
  
 0.975
ribA_2
GTP cyclohydrolase II; Overlaps another CDS with the same product name.
  
 0.975
EXF47094.1
Flagellar protein FlaG protein.
   
   0.969
ribF
Bifunctional riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.
  
 
 0.904
accC
acetyl-CoA carboxylase biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
   0.891
EXF45768.1
Biotin carboxylation domain-containing protein.
   
   0.891
EXF45769.1
Biotin carboxylase.
   
   0.891
Your Current Organism:
Pseudomonas sp. BAY1663
NCBI taxonomy Id: 1439940
Other names: P. sp. BAY1663
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.