STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718095_03497Unannotated protein. (83 aa)    
Predicted Functional Partners:
GCA_000718095_05588
Unannotated protein.
 
     0.772
GCA_000718095_05619
Unannotated protein.
 
     0.766
Y717_12280
Unannotated protein.
 
     0.670
GCA_000718095_03495
Unannotated protein.
 
     0.602
GCA_000718095_03496
Unannotated protein.
 
     0.568
Y717_30800
Unannotated protein.
  
     0.517
Y717_03650
Unannotated protein.
  
     0.454
Y717_00135
Unannotated protein.
  
     0.453
GCA_000718095_05860
Unannotated protein.
  
     0.453
Y717_08115
Unannotated protein.
  
     0.451
Your Current Organism:
Streptomyces scopuliridis
NCBI taxonomy Id: 1440053
Other names: S. scopuliridis RB72, Streptomyces scopuliridis NRRL B-24574, Streptomyces scopuliridis RB72, Streptomyces sp. RB72
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.