STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL67490.1Type II secretion system protein E (GspE). (530 aa)    
Predicted Functional Partners:
SDL67550.1
General secretion pathway protein F.
 
 
 0.991
SDL67570.1
Type II secretion system protein G (GspG).
 
 0.974
SDL65198.1
Type II secretion system protein F (GspF).
 
 
 0.967
SDL65412.1
General secretion pathway protein L.
  
 
 0.932
SDL67668.1
General secretion pathway protein J.
  
 0.928
SDL67787.1
Type II secretion system protein D (GspD).
 
  
 0.889
SDL65256.1
Type II secretion system protein G (GspG).
 
 0.888
SDL67599.1
General secretion pathway protein H.
       0.779
SDL67633.1
Hypothetical protein.
       0.779
SDL67700.1
Hypothetical protein.
       0.779
Your Current Organism:
Maricaulis salignorans
NCBI taxonomy Id: 144026
Other names: CIP 107439, DSM 16077, LMG 19864, LMG:19864, M. salignorans, Maricaulis salignorans Abraham et al. 2002, Maricaulis sp. MCS18, Marinocaulobacter sp. MCS18, strain MCS 18
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.