STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM10641.1Proline 4-hydroxylase (includes Rps23 Pro-64 3,4-dihydroxylase Tpa1), contains SM-20 domain. (244 aa)    
Predicted Functional Partners:
SDM81221.1
Hypothetical protein.
  
     0.709
SDM45598.1
Elongation factor Tu C-terminal domain-containing protein.
   
   0.592
SDM87579.1
Elongation factor Tu C-terminal domain-containing protein.
   
   0.592
SDM88082.1
Elongation factor Tu GTP binding domain-containing protein.
   
   0.592
SDL69247.1
MTH538 TIR-like domain.
  
    0.583
SDL63230.1
TonB-dependent Receptor Plug Domain.
  
     0.549
SDM10607.1
Transcriptional regulator, TraR/DksA family.
       0.547
SDM82900.1
Iron complex outermembrane recepter protein.
  
     0.524
SDM87675.1
TonB-dependent Receptor Plug Domain.
  
     0.509
SDM22312.1
Aspartyl protease.
  
     0.493
Your Current Organism:
Maricaulis salignorans
NCBI taxonomy Id: 144026
Other names: CIP 107439, DSM 16077, LMG 19864, LMG:19864, M. salignorans, Maricaulis salignorans Abraham et al. 2002, Maricaulis sp. MCS18, Marinocaulobacter sp. MCS18, strain MCS 18
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.