SDM49055.1 protein (Maricaulis salignorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDM49055.1

stearoyl-CoA desaturase (delta-9 desaturase). (302 aa)

Predicted Functional Partners:

SDM75675.1

0.701

SDM49027.1

0.551

SDL74951.1

0.543

SDM49089.1

0.527

SDM49402.1

0.513

SDM76187.1

0.510

SDM49119.1

0.504

SDM19584.1

0.502

SDM47355.1

0.502

SDL94674.1

0.498

Your Current Organism:

Maricaulis salignorans

NCBI taxonomy Id: 144026
Other names: CIP 107439, DSM 16077, LMG 19864, LMG:19864, M. salignorans, Maricaulis salignorans Abraham et al. 2002, Maricaulis sp. MCS18, Marinocaulobacter sp. MCS18, strain MCS 18

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDL74951.1	SDM19584.1	SAMN04488568_10229	SAMN04488568_106114	TIGR02301 family protein.	Protein of unknown function.	0.615
SDL74951.1	SDM47355.1	SAMN04488568_10229	SAMN04488568_11211	TIGR02301 family protein.	Hypothetical protein.	0.712
SDL74951.1	SDM49055.1	SAMN04488568_10229	SAMN04488568_11261	TIGR02301 family protein.	stearoyl-CoA desaturase (delta-9 desaturase).	0.543
SDL94674.1	SDM49055.1	SAMN04488568_103132	SAMN04488568_11261	Hypothetical protein.	stearoyl-CoA desaturase (delta-9 desaturase).	0.498
SDM19584.1	SDL74951.1	SAMN04488568_106114	SAMN04488568_10229	Protein of unknown function.	TIGR02301 family protein.	0.615
SDM19584.1	SDM47355.1	SAMN04488568_106114	SAMN04488568_11211	Protein of unknown function.	Hypothetical protein.	0.763
SDM19584.1	SDM49055.1	SAMN04488568_106114	SAMN04488568_11261	Protein of unknown function.	stearoyl-CoA desaturase (delta-9 desaturase).	0.502
SDM47355.1	SDL74951.1	SAMN04488568_11211	SAMN04488568_10229	Hypothetical protein.	TIGR02301 family protein.	0.712
SDM47355.1	SDM19584.1	SAMN04488568_11211	SAMN04488568_106114	Hypothetical protein.	Protein of unknown function.	0.763
SDM47355.1	SDM49055.1	SAMN04488568_11211	SAMN04488568_11261	Hypothetical protein.	stearoyl-CoA desaturase (delta-9 desaturase).	0.502
SDM47355.1	SDM76187.1	SAMN04488568_11211	SAMN04488568_12117	Hypothetical protein.	NTE family protein.	0.542
SDM49027.1	SDM49055.1	SAMN04488568_11260	SAMN04488568_11261	PAS domain S-box-containing protein.	stearoyl-CoA desaturase (delta-9 desaturase).	0.551
SDM49055.1	SDL74951.1	SAMN04488568_11261	SAMN04488568_10229	stearoyl-CoA desaturase (delta-9 desaturase).	TIGR02301 family protein.	0.543
SDM49055.1	SDL94674.1	SAMN04488568_11261	SAMN04488568_103132	stearoyl-CoA desaturase (delta-9 desaturase).	Hypothetical protein.	0.498
SDM49055.1	SDM19584.1	SAMN04488568_11261	SAMN04488568_106114	stearoyl-CoA desaturase (delta-9 desaturase).	Protein of unknown function.	0.502
SDM49055.1	SDM47355.1	SAMN04488568_11261	SAMN04488568_11211	stearoyl-CoA desaturase (delta-9 desaturase).	Hypothetical protein.	0.502
SDM49055.1	SDM49027.1	SAMN04488568_11261	SAMN04488568_11260	stearoyl-CoA desaturase (delta-9 desaturase).	PAS domain S-box-containing protein.	0.551
SDM49055.1	SDM49089.1	SAMN04488568_11261	SAMN04488568_11262	stearoyl-CoA desaturase (delta-9 desaturase).	acyl-CoA dehydrogenase.	0.527
SDM49055.1	SDM49119.1	SAMN04488568_11261	SAMN04488568_11263	stearoyl-CoA desaturase (delta-9 desaturase).	acyl-CoA dehydrogenase.	0.504
SDM49055.1	SDM49402.1	SAMN04488568_11261	SAMN04488568_11268	stearoyl-CoA desaturase (delta-9 desaturase).	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.513

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About