node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM87579.1 | rplA | SAMN04488568_1281 | SAMN04488568_12810 | Elongation factor Tu C-terminal domain-containing protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.973 |
SDM87579.1 | rplK | SAMN04488568_1281 | SAMN04488568_1289 | Elongation factor Tu C-terminal domain-containing protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.973 |
SDM87579.1 | rplO | SAMN04488568_1281 | SAMN04488568_111101 | Elongation factor Tu C-terminal domain-containing protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.970 |
SDM87579.1 | rplU | SAMN04488568_1281 | SAMN04488568_101120 | Elongation factor Tu C-terminal domain-containing protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.970 |
SDM87579.1 | rplV | SAMN04488568_1281 | SAMN04488568_111115 | Elongation factor Tu C-terminal domain-containing protein. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.970 |
SDM87579.1 | rpmJ | SAMN04488568_1281 | SAMN04488568_10553 | Elongation factor Tu C-terminal domain-containing protein. | LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.970 |
SDM87579.1 | rpsE | SAMN04488568_1281 | SAMN04488568_111103 | Elongation factor Tu C-terminal domain-containing protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.970 |
SDM87579.1 | rpsG | SAMN04488568_1281 | SAMN04488568_12816 | Elongation factor Tu C-terminal domain-containing protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.973 |
SDM87579.1 | rpsL | SAMN04488568_1281 | SAMN04488568_12815 | Elongation factor Tu C-terminal domain-containing protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.973 |
SDM87579.1 | tsf | SAMN04488568_1281 | SAMN04488568_11840 | Elongation factor Tu C-terminal domain-containing protein. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.992 |
rplA | SDM87579.1 | SAMN04488568_12810 | SAMN04488568_1281 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Elongation factor Tu C-terminal domain-containing protein. | 0.973 |
rplA | rplK | SAMN04488568_12810 | SAMN04488568_1289 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplA | rplO | SAMN04488568_12810 | SAMN04488568_111101 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplA | rplU | SAMN04488568_12810 | SAMN04488568_101120 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplA | rplV | SAMN04488568_12810 | SAMN04488568_111115 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplA | rpmJ | SAMN04488568_12810 | SAMN04488568_10553 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.997 |
rplA | rpsE | SAMN04488568_12810 | SAMN04488568_111103 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.998 |
rplA | rpsG | SAMN04488568_12810 | SAMN04488568_12816 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
rplA | rpsL | SAMN04488568_12810 | SAMN04488568_12815 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |
rplA | tsf | SAMN04488568_12810 | SAMN04488568_11840 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Translation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.981 |