KDE97320.1 protein (Mycolicibacterium aromaticivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KDE97320.1

Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)

Predicted Functional Partners:

KDE97321.1

0.976

KDE96797.1

0.944

KDE98286.1

0.942

KDE96967.1

0.923

KDE96975.1

0.923

KDE96988.1

0.923

KDE97348.1

0.923

KDE96981.1

0.922

KDE97288.1

0.922

KDE97325.1

0.922

Your Current Organism:

Mycolicibacterium aromaticivorans

NCBI taxonomy Id: 1440774
Other names: M. aromaticivorans JS19b1 = JCM 16368, Mycobacterium aromaticivorans JCM 16368, Mycobacterium aromaticivorans JS19b1, Mycobacterium aromaticivorans JS19b1 = JCM 16368, Mycolicibacterium aromaticivorans JCM 16368 = JS19b1, Mycolicibacterium aromaticivorans JS19b1 = JCM 16368

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KDE96797.1	KDE97320.1	Y900_029610	Y900_029150	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KDE96967.1	KDE97320.1	Y900_027065	Y900_029150	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE96975.1	KDE97320.1	Y900_027105	Y900_029150	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE96981.1	KDE97320.1	Y900_027135	Y900_029150	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KDE96988.1	KDE97320.1	Y900_027170	Y900_029150	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE97288.1	KDE97320.1	Y900_028960	Y900_029150	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KDE97320.1	KDE96797.1	Y900_029150	Y900_029610	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KDE97320.1	KDE96967.1	Y900_029150	Y900_027065	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE97320.1	KDE96975.1	Y900_029150	Y900_027105	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE97320.1	KDE96981.1	Y900_029150	Y900_027135	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KDE97320.1	KDE96988.1	Y900_029150	Y900_027170	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE97320.1	KDE97288.1	Y900_029150	Y900_028960	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KDE97320.1	KDE97321.1	Y900_029150	Y900_029155	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
KDE97320.1	KDE97325.1	Y900_029150	Y900_029175	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KDE97320.1	KDE97348.1	Y900_029150	Y900_029305	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
KDE97320.1	KDE98286.1	Y900_029150	Y900_004845	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
KDE97321.1	KDE97320.1	Y900_029155	Y900_029150	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
KDE97321.1	KDE97325.1	Y900_029155	Y900_029175	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
KDE97325.1	KDE97320.1	Y900_029175	Y900_029150	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KDE97325.1	KDE97321.1	Y900_029175	Y900_029155	(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribosomal subunit interface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About