STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF67319.1Irp4 protein. (254 aa)    
Predicted Functional Partners:
AHF67685.1
Amino acid adenylation.
 
  
 0.999
AHF67747.1
Ribonuclease H.
 
  
 0.992
AHF67683.1
Amino acid adenylation.
 
  
 0.987
AHF67323.1
Yersiniabactin non-ribosomal peptide synthetase.
 
  
 0.949
AHF67320.1
Irp3 protein.
 
  
 0.948
AHF67321.1
Yersiniabactin polyketide/non-ribosomal peptide synthetase.
 
  
 0.948
AHF70212.1
Non-ribosomal peptide synthetase-related protein.
 
  
 0.945
AHF67746.1
Hypothetical protein.
 
  
 0.932
AHF67318.1
Irp5 protein.
 
  
 0.915
AHF68278.1
Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component.
 
  
 0.915
Your Current Organism:
Pseudomonas cichorii
NCBI taxonomy Id: 1441629
Other names: P. cichorii JBC1, Pseudomonas cichorii JBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.