STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF67562.1Type VI secretion protein, VC_A0114 family. (444 aa)    
Predicted Functional Partners:
AHF67563.1
Type IV / VI secretion system protein, DotU family.
 
  
 0.965
AHF67561.1
Type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.963
AHF67564.1
Type VI secretion protein IcmF.
 
  
 0.958
AHF67560.1
Hypothetical protein.
 
  
 0.943
AHF67719.1
Type IV / VI secretion system protein, DotU family.
 
  
 0.930
AHF67555.1
Type VI secretion protein, VC_A0110 family.
 
 
 0.929
AHF67269.1
Type VI secretion protein, VC_A0107 family.
 
  
 0.910
AHF67552.1
Type VI secretion protein, VC_A0107 family.
 
  
 0.904
AHF67556.1
Hypothetical protein.
 
  
 0.890
AHF67265.1
Type VI secretion protein, VC_A0110 family.
 
 
 0.889
Your Current Organism:
Pseudomonas cichorii
NCBI taxonomy Id: 1441629
Other names: P. cichorii JBC1, Pseudomonas cichorii JBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.