STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndst1N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a. (889 aa)    
Predicted Functional Partners:
glce
Glucuronic acid epimerase b.
   
 0.954
LOC103369704
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3.
  
  
 
0.899
ndst2
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2a.
  
  
 
0.899
LOC103364591
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.611
ENSSPAP00000023431
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.611
gpc2
Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.603
ENSSPAP00000011084
Glypican 6b; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.603
LOC103365236
Glypican 6a; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.603
gpc4
Glypican 4; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.603
LOC103359185
Glypican 5c; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 0.545
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.