STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wbp4Uncharacterized protein. (427 aa)    
Predicted Functional Partners:
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.976
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.959
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.959
zmat2
Zinc finger, matrin-type 2.
   
 0.956
mfap1
Microfibril associated protein 1.
   
 0.954
prpf38a
Pre-mRNA processing factor 38A.
   
 0.953
ENSSPAP00000004195
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.945
ppih
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.945
snrpb
Small nuclear ribonucleoprotein-associated protein.
    
 
 0.944
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.937
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.