Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rapgef6Rap guanine nucleotide exchange factor (GEF) 6. (1699 aa)    
Predicted Functional Partners:
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
   
  0.979
LOC103354437
RAP1A, member of RAS oncogene family a.
    
 0.938
rap1a
Uncharacterized protein.
    
 0.938
LOC103368175
Uncharacterized protein.
    
 0.937
f11r
F11 receptor, tandem duplicate 1.
     
 0.931
ptpn13
Tyrosine-protein phosphatase non-receptor type 13; Regulates negatively FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling.
    
 0.890
ENSSPAP00000029814
KIND domain-containing protein.
    
 0.890
PTPN20
Protein tyrosine phosphatase non-receptor type 20.
    
 0.890
LOC103355560
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
    
  0.887
magi3
Uncharacterized protein.
    
  0.887
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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