STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000001331Uncharacterized protein. (887 aa)    
Predicted Functional Partners:
LAMA2
Laminin subunit alpha 2.
  
 
 
0.936
ENSSPAP00000001368
Uncharacterized protein.
 
  
  0.929
itgb4
Integrin beta.
    
 0.926
LOC103366621
Laminin, beta 1a.
    
0.907
lamb2
Laminin, beta 2 (laminin S).
    
0.907
ITGA7
Integrin subunit alpha 7; Belongs to the integrin alpha chain family.
    
 0.906
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
    
 0.905
itga1
Integrin, alpha 1; Belongs to the integrin alpha chain family.
    
 0.905
itga10
Integrin, alpha 10; Belongs to the integrin alpha chain family.
    
 0.905
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
    
 0.900
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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