STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lmbr1Limb development membrane protein 1; Belongs to the LIMR family. (492 aa)    
Predicted Functional Partners:
eprs1
Glutamyl-prolyl-tRNA synthetase.
    
 
 0.769
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
      
 0.648
LOC103355142
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
      
 0.647
lum
Lumican.
      
 0.615
sigmar1
Sigma non-opioid intracellular receptor 1.
    
 
 0.609
rnf32
Ring finger protein 32.
    
 
 0.606
zbtb16
Zinc finger and BTB domain containing 16a.
     
 0.589
slc35f3
Solute carrier family 35 member F3b.
      
 0.575
nom1
Nucleolar protein with MIF4G domain 1.
      
 0.571
dusp28
Dual specificity phosphatase 28.
      
 0.564
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.