STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN6Calpain 6; Belongs to the peptidase C2 family. (643 aa)    
Predicted Functional Partners:
LOC103372139
Uncharacterized protein.
 
 
 0.869
LOC103368853
Calpain, small subunit 1 b.
 
 
 0.798
ENSSPAP00000024918
Uncharacterized protein.
    
 0.796
LOC103371221
Intersectin 2b.
   
 
  0.618
ENSSPAP00000031427
Uncharacterized protein.
   
 
  0.618
ENSSPAP00000031428
Uncharacterized protein.
   
 
  0.618
LOC103357826
Caspase a; Belongs to the peptidase C14A family.
   
 0.612
pef1
Penta-EF-hand domain containing 1.
   
 0.591
pdcd6
Programmed cell death 6.
   
 0.591
sri
Uncharacterized protein.
   
 0.588
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.