Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zc3h10Zinc finger CCCH-type containing 10. (554 aa)    
Predicted Functional Partners:
gpatch4
G patch domain containing 4.
    
   0.791
rpl30
Ribosomal protein L30.
   
   0.788
nfya
Nuclear transcription factor Y, alpha, like.
    
   0.770
rpl26l1
Ribosomal protein L26.
   
   0.768
bcdin3d
BCDIN3 domain containing.
   
  
 0.725
uhrf1
Ubiquitin-like with PHD and ring finger domains 1.
      
 0.701
UHRF2
Ubiquitin like with PHD and ring finger domains 2.
      
 0.701
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
      
 0.693
CDYL2
Chromodomain Y like 2.
      
 0.685
cdyl
Chromodomain protein, Y-like.
      
 0.685
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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