Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OTOP1Otopetrin 1. (596 aa)    
Predicted Functional Partners:
ENSSPAP00000004320
PA2c domain-containing protein.
      
 0.781
LOC103357829
Otolin 1b.
      
 0.739
tmem128
Transmembrane protein 107.
 
    
 0.727
tecta
Tectorin alpha.
      
 0.701
LOC103364679
Otolith matrix protein.
      
 0.700
otol1
Otolin 1a.
      
 0.698
ganc
Glucosidase, alpha; neutral C; Belongs to the glycosyl hydrolase 31 family.
      
 0.643
armc9
Armadillo repeat containing 9.
      
 0.642
slc30a4
Solute carrier family 30 member 4.
      
 0.641
rftn2
Raftlin family member 2.
      
 0.604
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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