STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pagr1PAXIP1 associated glutamate-rich protein 1. (265 aa)    
Predicted Functional Partners:
LOC103363664
Lysine (K)-specific demethylase 6A, like.
    
 0.903
kdm6a
Lysine (K)-specific demethylase 6A.
    
 0.903
paxip1
PAX interacting (with transcription-activation domain) protein 1.
    
 0.890
mdc1
Uncharacterized protein.
    
 0.890
rbbp5
Retinoblastoma binding protein 5.
    
 0.882
ncoa6
Nuclear receptor coactivator 6.
    
 0.880
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.877
kdm6b
Lysine (K)-specific demethylase 6B, a.
    
 0.863
LOC103363029
Lysine (K)-specific demethylase 6B, b.
    
 0.863
wdr5
WD repeat domain 5.
    
 0.823
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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