Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSPAP00000002007HMG box domain-containing protein. (249 aa)    
Predicted Functional Partners:
LOC103374273
POU domain protein.
    
 0.825
LOC103354555
Nanog homeobox.
    
 0.751
LOC103359554
Uncharacterized protein.
    
 0.578
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.578
LOC103362533
Junction plakoglobin a.
    
 0.578
LOC103371495
Uncharacterized protein.
    
 0.578
LOC103358548
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.556
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.556
pou2f1
POU domain protein.
    
 0.547
LOC103362866
POU domain protein.
    
 0.547
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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