STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubl7Ubiquitin-like 7b (bone marrow stromal cell-derived). (379 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 0.994
LOC103371221
Intersectin 2b.
    
 0.986
ENSSPAP00000031427
Uncharacterized protein.
    
 0.986
ENSSPAP00000031428
Uncharacterized protein.
    
 0.986
nbr1
NBR1 autophagy cargo receptor a.
   
 0.962
ENSSPAP00000017545
N_BRCA1_IG domain-containing protein.
   
 0.962
psmd13
Proteasome 26S subunit, non-ATPase 13.
   
 0.956
trip12
Thyroid hormone receptor interactor 12.
   
 0.955
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.952
traf7
TNF receptor-associated factor 7.
    
 0.950
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.