STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nlrc5NACHT domain-containing protein. (1705 aa)    
Predicted Functional Partners:
ENSSPAP00000002820
Uncharacterized protein.
   
 0.802
LOC103369011
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.802
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.802
rfxank
Regulatory factor X-associated ankyrin-containing protein.
   
 0.796
ifih1
Interferon induced with helicase C domain 1.
   
 0.783
UBB
Ubiquitin B.
    
  0.756
rps27a
Ribosomal protein S27a.
    
  0.754
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.741
LOC103357826
Caspase a; Belongs to the peptidase C14A family.
   
 0.735
pycard
PYD and CARD domain containing.
   
 0.722
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.