ENSSPAP00000002246 protein (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSPAP00000002246

Cyclic nucleotide gated channel subunit alpha 1b. (502 aa)

Predicted Functional Partners:

ENSSPAP00000007368

0.937

ENSSPAP00000011094

0.901

LOC103369883

0.900

LOC103363254

0.842

LOC103363255

0.842

LOC103372325

0.841

calm1

0.841

LOC103353515

0.841

LOC103370449

0.841

guca1b

0.630

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000002246	ENSSPAP00000007368	ENSSPAP00000002246	ENSSPAP00000007368	Cyclic nucleotide gated channel subunit alpha 1b.	Si:dkey-44k1.5.	0.937
ENSSPAP00000002246	ENSSPAP00000011094	ENSSPAP00000002246	ENSSPAP00000011094	Cyclic nucleotide gated channel subunit alpha 1b.	Calmodulin-like 4a.	0.901
ENSSPAP00000002246	LOC103353515	ENSSPAP00000002246	ENSSPAP00000012283	Cyclic nucleotide gated channel subunit alpha 1b.	Calmodulin.	0.841
ENSSPAP00000002246	LOC103363254	ENSSPAP00000002246	ENSSPAP00000031459	Cyclic nucleotide gated channel subunit alpha 1b.	Cyclic nucleotide gated channel beta 3, tandem duplicate 1.	0.842
ENSSPAP00000002246	LOC103363255	ENSSPAP00000002246	ENSSPAP00000031460	Cyclic nucleotide gated channel subunit alpha 1b.	Cyclic nucleotide gated channel beta 3, tandem duplicate 2.	0.842
ENSSPAP00000002246	LOC103369883	ENSSPAP00000002246	ENSSPAP00000017932	Cyclic nucleotide gated channel subunit alpha 1b.	Cyclic nucleotide gated channel subunit alpha 1a.	0.900
ENSSPAP00000002246	LOC103370449	ENSSPAP00000002246	ENSSPAP00000025685	Cyclic nucleotide gated channel subunit alpha 1b.	Calmodulin.	0.841
ENSSPAP00000002246	LOC103372325	ENSSPAP00000002246	ENSSPAP00000000925	Cyclic nucleotide gated channel subunit alpha 1b.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.841
ENSSPAP00000002246	calm1	ENSSPAP00000002246	ENSSPAP00000008309	Cyclic nucleotide gated channel subunit alpha 1b.	Calmodulin 1.	0.841
ENSSPAP00000002246	guca1b	ENSSPAP00000002246	ENSSPAP00000025742	Cyclic nucleotide gated channel subunit alpha 1b.	Guanylate cyclase activator 1B.	0.630
ENSSPAP00000007368	ENSSPAP00000002246	ENSSPAP00000007368	ENSSPAP00000002246	Si:dkey-44k1.5.	Cyclic nucleotide gated channel subunit alpha 1b.	0.937
ENSSPAP00000007368	ENSSPAP00000011094	ENSSPAP00000007368	ENSSPAP00000011094	Si:dkey-44k1.5.	Calmodulin-like 4a.	0.894
ENSSPAP00000007368	LOC103353515	ENSSPAP00000007368	ENSSPAP00000012283	Si:dkey-44k1.5.	Calmodulin.	0.848
ENSSPAP00000007368	LOC103369883	ENSSPAP00000007368	ENSSPAP00000017932	Si:dkey-44k1.5.	Cyclic nucleotide gated channel subunit alpha 1a.	0.942
ENSSPAP00000007368	LOC103370449	ENSSPAP00000007368	ENSSPAP00000025685	Si:dkey-44k1.5.	Calmodulin.	0.848
ENSSPAP00000007368	LOC103372325	ENSSPAP00000007368	ENSSPAP00000000925	Si:dkey-44k1.5.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.848
ENSSPAP00000007368	calm1	ENSSPAP00000007368	ENSSPAP00000008309	Si:dkey-44k1.5.	Calmodulin 1.	0.848
ENSSPAP00000007368	guca1b	ENSSPAP00000007368	ENSSPAP00000025742	Si:dkey-44k1.5.	Guanylate cyclase activator 1B.	0.700
ENSSPAP00000011094	ENSSPAP00000002246	ENSSPAP00000011094	ENSSPAP00000002246	Calmodulin-like 4a.	Cyclic nucleotide gated channel subunit alpha 1b.	0.901
ENSSPAP00000011094	ENSSPAP00000007368	ENSSPAP00000011094	ENSSPAP00000007368	Calmodulin-like 4a.	Si:dkey-44k1.5.	0.894