STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ift140Intraflagellar transport 140 homolog (Chlamydomonas). (1420 aa)    
Predicted Functional Partners:
wdr19
WD repeat domain 19.
    
0.998
wdr35
WD repeat-containing protein 35.
    
 0.996
ttc21b
Tetratricopeptide repeat domain 21B.
   
 0.990
IFT122
Intraflagellar transport 122.
  
 0.988
ENSSPAP00000027741
Uncharacterized protein.
   
 0.986
IFT43
Intraflagellar transport 43.
    
 0.979
ENSSPAP00000018668
Uncharacterized protein.
    
 0.979
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.923
ift20
Intraflagellar transport 20 homolog (Chlamydomonas).
    
 0.885
ift81
Intraflagellar transport 81 homolog.
    
 0.874
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.