STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urodUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (369 aa)    
Predicted Functional Partners:
hmbs
Hydroxymethylbilane synthase a.
 0.995
ppox
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.994
cpox
Coproporphyrinogen oxidase.
  
 0.970
uros
Uroporphyrinogen III synthase.
  
 
 0.963
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.945
IYD
Iodotyrosine deiodinase.
    
 0.903
cth
Cystathionase (cystathionine gamma-lyase), like.
    
 0.845
ENSSPAP00000021795
Flavodoxin-like domain-containing protein.
    
 0.841
rnls
Renalase, FAD-dependent amine oxidase.
     
 0.821
mocs1
Molybdenum cofactor synthesis 1.
    
  0.821
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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